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Monday, January 16, 2006

 

Challenge problem à

 

 

[350] ß  parallel discussion in “national debate” bead thread

 

This is part of a discussion that will be moved to a Wiki page soon.

 

 

Ontological modeling with category theory and convolutions

Post OWL strategy

 

 

[347] ß Judith Rosen’s recent communication

 

 

(In reference to an email from Dr Richard Ballard, founder of Knowledge Foundations Inc).

 

Dick,

 

Thank you for you kind note, you continue to be part of my family of friends. 

 

I do not know if the change to talking about my work will lead anywhere, but it might.  I am grateful for virtualTaos investments and for the new contract to ontologystream for consulting services. 

 

I have had long periods in my life where I was only concerned with the deep theory that I now have, and have in written form.  My being in Taos feels like a welcome and safe spot.  I am building new computer programs now.  The architecture is consistent with your Mark 3 architecture. 

 

I, like you, have developed an extensive description of work that is almost characterized by "me", even though I feel I have taken the time to ground this work in the work of others.

 

The note to the BioPAX group opens up a path to them/us thinking about "what is next".  I will be interested in the response, but can predict it.... they are properly busy doing something well defined; and the note from me is about the step after ... they complete this important first step.  But they are natural scientists, not computer scientists, and as a consequence they and I talk the same basic language. 

 

The "ontology" community is so absorbed in the technical difficulties of OWL and RDF standards that few are able to step back and realize the validity of the specific objections to specific foundation issues (unique IDs, and URIs) as well as the limitations of logic and mathematical formalism (when applied to natural complexity).  The ignorance of these issues, in the computer science community, are leading to a barely functional semantic web.   But when compared with world wide data interoperability now, this barely functional semantic web will become a true economic blessing.  

 

The completed Semantic Web will "work" but only as a oddity that does appear to (occasionally) do all the wrong things at the right time.  So there will be profound train wrecks in the use of Semantic Web realities.  But the emerging Semantic Web will, as Mill's points out, automate e-business in a way the is worth a few trillion, over the next ten years, in gained productivity.  His work with Knowledge Foundations Inc is most important. 

 

But the simplified general theory / architecture reveals a strategy that I feel can be implemented next, given that BioPAX and others and many business modeling ontologies are actually being developed to be read by the Stanford Protege software for editing and using OWL.

 

What Protege does NOT allow is an export to a pure concept ontology having none of the features that make Protege difficult to code.  However, I can see how to use a web portal to harvest well-formed Protege (an entanglement of Java and RDF/OWL) and stand the "content" up as a language independent Topic Map.  This could be done as a service to the larger community that is trying to understand what ontology is and how it can be used to standardize data schema.  It has to be far simpler than what the Stanford team has so far made "it". 

 

Here enters the OASIS SEE and SOA standards.  SEE stands for Semantic Execution Environment, SOA stands for Service Oriented Architecture.  SEE tries to address the need for flexibility in creating a situational finite state machine that arbitrates the data exchanges between two computer programs that might not have the same set of concept representations - and intended interpretations of those concept representations.  Example: an order for parts is a concept that can be represented using different data schema, and work flow (order completion).  Two companies will instrument order fulfillment using different standards (social agreements) because there is no correct one way to do the representation.  So the mediation process is needed, to orchestrate an iterative alignment of the intended meaning of the "web service". 

 

My current contract may allow the development of a hybrid standard called SIE (Semantic Interpretation Environment).  Here is where one hits the religious nature of the W3C advocates.  They do not acknowledge the need for a human in the loop and the notion that computer programs should "know" when they to not "know" correctly (with the definition of "correct" being "as humans intended the interpretation to be".)

 

So we are setting up a migration path that uses the expected hard instrumentation of human communication about data systems into OWL, and into Protege in particular.  This expectation is setting up both the proof that logic is limited and the data resource that can be mined and converted into simple n-aries.

 

We, you and I and a few others, will then be able to show the alternative as being both far simpler that anyone will allow now, and far more useful.   The automation will be coupled with human in the loop where the human will be non-computer scientists.

 

Mill's vision is consistent with the SIE pathway, but he does not as yet see the details that you and I see about how the Knowledge Age will suddenly appear.

 

In many ways we are already there, but the emergence of the OWL ontologies will be the last design mistake (it is my expectation) before true knowledge based tools will be ubiquitous in education, government and commerce. 

 

Dr Paul Prueitt PhD (mathematics and quantum cognitive neuroscience)

The Taos Research Institute

Taos New Mexico